OBGEN(1) General Commands Manual (urm) OBGEN(1)
نام (NAME)
obgen – generate 3D coordinates for a molecule
خلاصه دستور (SYNOPSIS)
obgen [OPTIONS] filename
توضیحات (DESCRIPTION)
The obgen tool will generate 3D coordinates for molecules in a file (e.g.
multi-molecule SMILES files). The resulting structure will be optimized
using the given forcefield and checked for the lowest-energy conformer
using a Monte Carlo search. Output will be sent to standard output in
the SDF file format.
گزینهها (OPTIONS)
If no filename is given, obgen will give all options including the
available forcefields.
-ff forcefield
Select the forcefield
محیط (ENVIRONMENT)
OB_RANDOM_SEED
Seed for pseudo random number generator; random seed is used if
unset or null. This feature is effective if Open Babel is built
with -DOB_USE_OBRANDOMMT cpreprocessor flag (will be automatically
enabled when version 4 is released).
مثالها (EXAMPLES)
View the possible options, including available forcefields:
obgen
Generate 3D coordinates for the molecule(s) in file test.smi:
obgen test.smi
Generate 3D coordinates for the molecule(s) in file test.smi using the
UFF forcefield:
obgen -ff UFF test.smi
همچنین ببینید (SEE ALSO)
obabel(1), obconformer(1), obminimize(1).
The web pages for Open Babel can be found at:
The web pages for Open Babel Molecular Mechanics can be found at:
نویسندگان (AUTHORS)
The obgen program was contributed by Tim Vandermeersch.
Open Babel is developed by a cast of many, including current maintainers
Geoff Hutchison, Chris Morley, Michael Banck, and innumerable others who
have contributed fixes and additions. For more contributors to Open
Babel, see
حق نشر (COPYRIGHT)
Copyright (C) 2007-2008 by Tim Vandermeersch.
This program is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation version 2 of the License.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details.
Open Babel 3.2 May 26, 2026 Open Babel 3.2